IL_9D7S_036
3D structure
- PDB id
- 9D7S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- CCCCCAAG*CG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D7S_036 not in the Motif Atlas
- Homologous match to IL_9DFE_036
- Geometric discrepancy: 0.0614
- The information below is about IL_9DFE_036
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
9D7S|1|1A|C|1004
9D7S|1|1A|C|1005
9D7S|1|1A|C|1006
9D7S|1|1A|C|1007
9D7S|1|1A|C|1008
9D7S|1|1A|A|1009
9D7S|1|1A|A|1010
9D7S|1|1A|G|1011
*
9D7S|1|1A|C|1150
9D7S|1|1A|G|1151
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1N
- 50S ribosomal protein L13
- Chain 1U
- 50S ribosomal protein L20
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