IL_9D7S_051

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_051 not in the Motif Atlas

Homologous match to IL_9DFE_052

Geometric discrepancy: 0.0585

The information below is about IL_9DFE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9D7S|1|1A|U|1357
9D7S|1|1A|G|1358
9D7S|1|1A|A|1359
9D7S|1|1A|A|1360
9D7S|1|1A|G|1361
*
9D7S|1|1A|C|1370
9D7S|1|1A|G|1371
9D7S|1|1A|U|1372
9D7S|1|1A|A|1373
9D7S|1|1A|G|1374

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2