IL_9D7S_061

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

9D7S|1|1A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_061 not in the Motif Atlas

Homologous match to IL_9DFE_062

Geometric discrepancy: 0.0703

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9D7S|1|1A|G|1526
9D7S|1|1A|G|1527
9D7S|1|1A|A|1528
9D7S|1|1A|A|1528|||A
9D7S|1|1A|G|1529
*
9D7S|1|1A|U|1540
9D7S|1|1A|G|1541
9D7S|1|1A|A|1542
9D7S|1|1A|C|1543
9D7S|1|1A|A|1544
9D7S|1|1A|A|1545
9D7S|1|1A|C|1546

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains