IL_9D7S_069
3D structure
- PDB id
- 9D7S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- UGCGAAC*GGAGGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 9D7S|1|1A|G|1801, 9D7S|1|1A|G|1816, 9D7S|1|1A|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D7S_069 not in the Motif Atlas
- Homologous match to IL_9DFE_070
- Geometric discrepancy: 0.0511
- The information below is about IL_9DFE_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.5
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9D7S|1|1A|U|1798
9D7S|1|1A|G|1799
9D7S|1|1A|C|1800
9D7S|1|1A|G|1801
9D7S|1|1A|A|1802
9D7S|1|1A|A|1803
9D7S|1|1A|C|1804
*
9D7S|1|1A|G|1813
9D7S|1|1A|G|1814
9D7S|1|1A|A|1815
9D7S|1|1A|G|1816
9D7S|1|1A|G|1817
9D7S|1|1A|U|1818
9D7S|1|1A|A|1819
9D7S|1|1A|U|1820
9D7S|1|1A|A|1821
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: