IL_9D7S_087
3D structure
- PDB id
- 9D7S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- CAG*CGGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D7S_087 not in the Motif Atlas
- Homologous match to IL_9DFE_088
- Geometric discrepancy: 0.1006
- The information below is about IL_9DFE_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14250.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 10
Unit IDs
9D7S|1|1A|C|2297
9D7S|1|1A|A|2298
9D7S|1|1A|G|2299
*
9D7S|1|1A|C|2317
9D7S|1|1A|G|2318
9D7S|1|1A|G|2319
9D7S|1|1A|A|2320
9D7S|1|1A|G|2321
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1G
- 50S ribosomal protein L5
- Chain 1S
- 50S ribosomal protein L18
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