IL_9D7S_109

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9D7S|1|1B|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_109 not in the Motif Atlas

Homologous match to IL_9DFE_110

Geometric discrepancy: 0.1034

The information below is about IL_9DFE_110

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9D7S|1|1B|C|17
9D7S|1|1B|G|18
*
9D7S|1|1B|C|65
9D7S|1|1B|A|66
9D7S|1|1B|G|67

Current chains

Chain 1B

5S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1S

50S ribosomal protein L18

Chain 1Z

50S ribosomal protein L25