IL_9D7S_165
3D structure
- PDB id
- 9D7S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- C(5MC)G*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 9D7S|1|1a|5MC|1400, 9D7S|1|1a|A|1503
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D7S_165 not in the Motif Atlas
- Homologous match to IL_4LFB_056
- Geometric discrepancy: 0.2659
- The information below is about IL_4LFB_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9D7S|1|1a|C|1399
9D7S|1|1a|5MC|1400
9D7S|1|1a|G|1401
*
9D7S|1|1a|C|1501
9D7S|1|1a|A|1502
9D7S|1|1a|A|1503
9D7S|1|1a|G|1504
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1v
- PHE-Stop mRNA
- Chain 1w
- Peptide chain release factor 1
- Chain 1x
- Transfer RNA; tRNA
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