IL_9D7S_195

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

9D7S|1|2A|G|776, 9D7S|1|2A|A|788, 9D7S|1|2A|A|789, 9D7S|1|2A|C|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_195 not in the Motif Atlas

Homologous match to IL_9DFE_021

Geometric discrepancy: 0.0889

The information below is about IL_9DFE_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9D7S|1|2A|G|775
9D7S|1|2A|G|776
9D7S|1|2A|A|777
*
9D7S|1|2A|U|787
9D7S|1|2A|A|788
9D7S|1|2A|A|789
9D7S|1|2A|C|790
9D7S|1|2A|C|791

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L22

Chain 2z

Api Antimicrobial Peptide