IL_9D7S_222

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

9D7S|1|2A|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_222 not in the Motif Atlas

Homologous match to IL_9DFE_051

Geometric discrepancy: 0.0734

The information below is about IL_9DFE_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9D7S|1|2A|C|1351
9D7S|1|2A|U|1352
9D7S|1|2A|A|1353
9D7S|1|2A|A|1354
9D7S|1|2A|G|1355
*
9D7S|1|2A|C|1376
9D7S|1|2A|G|1377
9D7S|1|2A|A|1378
9D7S|1|2A|A|1379
9D7S|1|2A|G|1380

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2