IL_9D7S_225

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

9D7S|1|2A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_225 not in the Motif Atlas

Homologous match to IL_9DFE_054

Geometric discrepancy: 0.1862

The information below is about IL_9DFE_054

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9D7S|1|2A|C|1417
9D7S|1|2A|G|1418
9D7S|1|2A|A|1419
9D7S|1|2A|U|1420
9D7S|1|2A|G|1421
*
9D7S|1|2A|C|1577
9D7S|1|2A|U|1578
9D7S|1|2A|A|1579
9D7S|1|2A|A|1580
9D7S|1|2A|G|1581

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains