IL_9D7S_273

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_273 not in the Motif Atlas

Homologous match to IL_9DFE_102

Geometric discrepancy: 0.0738

The information below is about IL_9DFE_102

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9D7S|1|2A|C|2652
9D7S|1|2A|U|2653
9D7S|1|2A|A|2654
9D7S|1|2A|G|2655
9D7S|1|2A|U|2656
9D7S|1|2A|A|2657
9D7S|1|2A|C|2658
*
9D7S|1|2A|G|2663
9D7S|1|2A|G|2664
9D7S|1|2A|A|2665
9D7S|1|2A|C|2666
9D7S|1|2A|C|2667
9D7S|1|2A|G|2668

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6