IL_9D7S_280

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_280 not in the Motif Atlas

Homologous match to IL_9DFE_109

Geometric discrepancy: 0.0814

The information below is about IL_9DFE_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

9D7S|1|2A|U|2847
9D7S|1|2A|G|2848
9D7S|1|2A|U|2849
9D7S|1|2A|A|2850
9D7S|1|2A|A|2851
9D7S|1|2A|G|2852
*
9D7S|1|2A|U|2865
9D7S|1|2A|U|2866
9D7S|1|2A|G|2867
9D7S|1|2A|A|2868
9D7S|1|2A|G|2869

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA