IL_9D7S_302

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

9D7S|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_302 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.12

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9D7S|1|2a|G|409
9D7S|1|2a|G|410
9D7S|1|2a|A|411
9D7S|1|2a|A|412
9D7S|1|2a|G|413
9D7S|1|2a|A|414
9D7S|1|2a|A|415
9D7S|1|2a|G|416
*
9D7S|1|2a|U|427
9D7S|1|2a|G|428
9D7S|1|2a|U|429
9D7S|1|2a|A|430
9D7S|1|2a|A|431
9D7S|1|2a|A|432
9D7S|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4