IL_9D7S_316

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

9D7S|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_316 not in the Motif Atlas

Homologous match to IL_6CZR_143

Geometric discrepancy: 0.1187

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

9D7S|1|2a|G|683
9D7S|1|2a|A|684
9D7S|1|2a|G|685
9D7S|1|2a|U|686
9D7S|1|2a|A|687
9D7S|1|2a|G|688
*
9D7S|1|2a|C|699
9D7S|1|2a|G|700
9D7S|1|2a|C|701
9D7S|1|2a|A|702
9D7S|1|2a|G|703
9D7S|1|2a|A|704
9D7S|1|2a|U|705
9D7S|1|2a|A|706
9D7S|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11