IL_9D7S_332

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

9D7S|1|2a|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_332 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1455

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9D7S|1|2a|C|1158
9D7S|1|2a|U|1159
9D7S|1|2a|G|1160
9D7S|1|2a|C|1161
*
9D7S|1|2a|G|1175
9D7S|1|2a|A|1176
9D7S|1|2a|G|1177
9D7S|1|2a|G|1178
9D7S|1|2a|A|1179
9D7S|1|2a|A|1180
9D7S|1|2a|G|1181

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9