IL_9D7S_351

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CCUGUGAACC*GGGGAGG

Length

17 nucleotides

Bulged bases

9D7S|1|2A|U|2130, 9D7S|1|2A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D7S|1|2A|C|2128
9D7S|1|2A|C|2129
9D7S|1|2A|U|2130
9D7S|1|2A|G|2131
9D7S|1|2A|U|2132
9D7S|1|2A|G|2133
9D7S|1|2A|A|2134
9D7S|1|2A|A|2135
9D7S|1|2A|C|2136
9D7S|1|2A|C|2137
*
9D7S|1|2A|G|2154
9D7S|1|2A|G|2155
9D7S|1|2A|G|2156
9D7S|1|2A|G|2157
9D7S|1|2A|A|2158
9D7S|1|2A|G|2159
9D7S|1|2A|G|2160

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains