3D structure

PDB id
9D7T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CGCUGAC*GGUGGAG
Length
14 nucleotides
Bulged bases
9D7T|1|1A|G|932
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9D7T_024 not in the Motif Atlas
Geometric match to IL_8VTW_349
Geometric discrepancy: 0.039
The information below is about IL_8VTW_349
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_48600.1
Basepair signature
cWW-L-cWW-cWW-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

9D7T|1|1A|C|844
9D7T|1|1A|G|845
9D7T|1|1A|C|846
9D7T|1|1A|U|847
9D7T|1|1A|G|848
9D7T|1|1A|A|849
9D7T|1|1A|C|850
*
9D7T|1|1A|G|927
9D7T|1|1A|G|928
9D7T|1|1A|U|930
9D7T|1|1A|G|931
9D7T|1|1A|G|932
9D7T|1|1A|A|933
9D7T|1|1A|G|934

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 13
50S ribosomal protein L30

Coloring options:


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