3D structure

PDB id
9D7T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GAUAAC*GGAAGC
Length
12 nucleotides
Bulged bases
9D7T|1|1A|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9D7T_105 not in the Motif Atlas
Homologous match to IL_9DFE_106
Geometric discrepancy: 0.0569
The information below is about IL_9DFE_106
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

9D7T|1|1A|G|2737
9D7T|1|1A|A|2738
9D7T|1|1A|U|2739
9D7T|1|1A|A|2740
9D7T|1|1A|A|2741
9D7T|1|1A|C|2742
*
9D7T|1|1A|G|2762
9D7T|1|1A|G|2763
9D7T|1|1A|A|2764
9D7T|1|1A|A|2765
9D7T|1|1A|G|2766
9D7T|1|1A|C|2767

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L36
Chain 1H
50S ribosomal protein L6
Chain 1N
50S ribosomal protein L13

Coloring options:


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