IL_9D7T_186

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

9D7T|1|2A|U|504, 9D7T|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7T_186 not in the Motif Atlas

Geometric match to IL_8VTW_013

Geometric discrepancy: 0.0545

The information below is about IL_8VTW_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

9D7T|1|2A|G|481
9D7T|1|2A|A|482
9D7T|1|2A|A|483
9D7T|1|2A|C|484
*
9D7T|1|2A|G|496
9D7T|1|2A|A|497
9D7T|1|2A|G|498
9D7T|1|2A|U|499
9D7T|1|2A|G|500
9D7T|1|2A|A|501
9D7T|1|2A|A|502
9D7T|1|2A|A|503
9D7T|1|2A|U|504
9D7T|1|2A|A|505
9D7T|1|2A|G|506
9D7T|1|2A|A|507
9D7T|1|2A|G|508
9D7T|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24