IL_9D7T_199

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7T_199 not in the Motif Atlas

Homologous match to IL_9DFE_025

Geometric discrepancy: 0.0835

The information below is about IL_9DFE_025

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9D7T|1|2A|C|846
9D7T|1|2A|U|847
9D7T|1|2A|G|848
9D7T|1|2A|A|849
9D7T|1|2A|C|850
*
9D7T|1|2A|G|927
9D7T|1|2A|G|928
9D7T|1|2A|U|930
9D7T|1|2A|G|931

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30