IL_9D7T_205

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UAGGGG*CUACCA

Length

12 nucleotides

Bulged bases

9D7T|1|2A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D7T|1|2A|U|877
9D7T|1|2A|A|878
9D7T|1|2A|G|879
9D7T|1|2A|G|880
9D7T|1|2A|G|881
9D7T|1|2A|G|882
*
9D7T|1|2A|C|894
9D7T|1|2A|U|895
9D7T|1|2A|A|896
9D7T|1|2A|C|897
9D7T|1|2A|C|898
9D7T|1|2A|A|899

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25