IL_9D7T_240

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

9D7T|1|2A|G|1801, 9D7T|1|2A|G|1816, 9D7T|1|2A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7T_240 not in the Motif Atlas

Homologous match to IL_9DFE_070

Geometric discrepancy: 0.0658

The information below is about IL_9DFE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9D7T|1|2A|U|1798
9D7T|1|2A|G|1799
9D7T|1|2A|C|1800
9D7T|1|2A|G|1801
9D7T|1|2A|A|1802
9D7T|1|2A|A|1803
9D7T|1|2A|C|1804
*
9D7T|1|2A|G|1813
9D7T|1|2A|G|1814
9D7T|1|2A|A|1815
9D7T|1|2A|G|1816
9D7T|1|2A|G|1817
9D7T|1|2A|U|1818
9D7T|1|2A|A|1819
9D7T|1|2A|U|1820
9D7T|1|2A|A|1821

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA