IL_9D7T_249
3D structure
- PDB id
- 9D7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- ACGA*UCUAU
- Length
- 9 nucleotides
- Bulged bases
- 9D7T|1|2A|C|2055, 9D7T|1|2A|C|2612, 9D7T|1|2A|U|2613, 9D7T|1|2A|A|2614
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D7T_249 not in the Motif Atlas
- Homologous match to IL_9DFE_079
- Geometric discrepancy: 0.0818
- The information below is about IL_9DFE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70335.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9D7T|1|2A|A|2054
9D7T|1|2A|C|2055
9D7T|1|2A|G|2056
9D7T|1|2A|A|2057
*
9D7T|1|2A|U|2611
9D7T|1|2A|C|2612
9D7T|1|2A|U|2613
9D7T|1|2A|A|2614
9D7T|1|2A|U|2615
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 25
- 50S ribosomal protein L32
- Chain 2E
- 50S ribosomal protein L3
- Chain 2W
- 50S ribosomal protein L22
- Chain 2z
- Api137 Antimicrobial Peptide
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