IL_9D7T_256

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAGCC*GGCGCCGGUGAAAUAC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D7T|1|2A|G|2124
9D7T|1|2A|G|2125
9D7T|1|2A|A|2126
9D7T|1|2A|G|2127
9D7T|1|2A|C|2128
9D7T|1|2A|C|2129
*
9D7T|1|2A|G|2159
9D7T|1|2A|G|2160
9D7T|1|2A|C|2161
9D7T|1|2A|G|2162
9D7T|1|2A|C|2163
9D7T|1|2A|C|2164
9D7T|1|2A|G|2165
9D7T|1|2A|G|2166
9D7T|1|2A|U|2167
9D7T|1|2A|G|2168
9D7T|1|2A|A|2169
9D7T|1|2A|A|2170
9D7T|1|2A|A|2171
9D7T|1|2A|U|2172
9D7T|1|2A|A|2173
9D7T|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA