IL_9DFC_001
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFC_001 not in the Motif Atlas
- Homologous match to IL_9DFE_001
- Geometric discrepancy: 0.0508
- The information below is about IL_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
9DFC|1|1A|G|24
9DFC|1|1A|U|25
9DFC|1|1A|G|26
9DFC|1|1A|G|27
9DFC|1|1A|A|28
9DFC|1|1A|U|29
9DFC|1|1A|G|30
*
9DFC|1|1A|C|510
9DFC|1|1A|U|511
9DFC|1|1A|G|512
9DFC|1|1A|A|513
9DFC|1|1A|A|514
9DFC|1|1A|A|515
9DFC|1|1A|C|516
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
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