IL_9DFC_019

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFC_019 not in the Motif Atlas

Homologous match to IL_9DFE_019

Geometric discrepancy: 0.0539

The information below is about IL_9DFE_019

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9DFC|1|1A|U|703
9DFC|1|1A|G|704
9DFC|1|1A|A|705
9DFC|1|1A|A|706
9DFC|1|1A|G|707
*
9DFC|1|1A|U|724
9DFC|1|1A|G|725
9DFC|1|1A|G|726
9DFC|1|1A|A|727
9DFC|1|1A|G|728

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2