IL_9DFC_053

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

9DFC|1|1A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFC_053 not in the Motif Atlas

Homologous match to IL_9DFE_054

Geometric discrepancy: 0.1881

The information below is about IL_9DFE_054

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9DFC|1|1A|C|1417
9DFC|1|1A|G|1418
9DFC|1|1A|A|1419
9DFC|1|1A|U|1420
9DFC|1|1A|G|1421
*
9DFC|1|1A|C|1577
9DFC|1|1A|U|1578
9DFC|1|1A|A|1579
9DFC|1|1A|A|1580
9DFC|1|1A|G|1581

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains