IL_9DFC_184

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CCGAAU*AUAGG

Length

11 nucleotides

Bulged bases

9DFC|1|2A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFC|1|2A|C|279
9DFC|1|2A|C|280
9DFC|1|2A|G|281
9DFC|1|2A|A|282
9DFC|1|2A|A|283
9DFC|1|2A|U|284
*
9DFC|1|2A|A|357
9DFC|1|2A|U|358
9DFC|1|2A|A|359
9DFC|1|2A|G|360
9DFC|1|2A|G|361

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains