IL_9DFC_196

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

9DFC|1|2A|G|776, 9DFC|1|2A|A|788, 9DFC|1|2A|A|789, 9DFC|1|2A|C|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFC_196 not in the Motif Atlas

Homologous match to IL_9DFE_021

Geometric discrepancy: 0.0833

The information below is about IL_9DFE_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9DFC|1|2A|G|775
9DFC|1|2A|G|776
9DFC|1|2A|A|777
*
9DFC|1|2A|U|787
9DFC|1|2A|A|788
9DFC|1|2A|A|789
9DFC|1|2A|C|790
9DFC|1|2A|C|791

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L22