IL_9DFC_200
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CUGAC*GGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFC_200 not in the Motif Atlas
- Homologous match to IL_9DFE_025
- Geometric discrepancy: 0.0948
- The information below is about IL_9DFE_025
- Detailed Annotation
- Stack outside cWW
- Broad Annotation
- Stack outside cWW
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9DFC|1|2A|C|846
9DFC|1|2A|U|847
9DFC|1|2A|G|848
9DFC|1|2A|A|849
9DFC|1|2A|C|850
*
9DFC|1|2A|G|927
9DFC|1|2A|G|928
9DFC|1|2A|U|930
9DFC|1|2A|G|931
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 1P
- 50S ribosomal protein L15
- Chain 23
- 50S ribosomal protein L30
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