IL_9DFC_211

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGUAAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

9DFC|1|2A|U|1026, 9DFC|1|2A|A|1127, 9DFC|1|2A|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFC_211 not in the Motif Atlas

Homologous match to IL_9DFE_039

Geometric discrepancy: 0.1217

The information below is about IL_9DFE_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

9DFC|1|2A|G|1024
9DFC|1|2A|G|1025
9DFC|1|2A|U|1026
9DFC|1|2A|A|1027
9DFC|1|2A|A|1028
9DFC|1|2A|A|1029
9DFC|1|2A|G|1030
*
9DFC|1|2A|C|1124
9DFC|1|2A|G|1125
9DFC|1|2A|A|1126
9DFC|1|2A|A|1127
9DFC|1|2A|A|1128
9DFC|1|2A|A|1129
9DFC|1|2A|U|1130
9DFC|1|2A|G|1131
9DFC|1|2A|A|1132
9DFC|1|2A|U|1133
9DFC|1|2A|C|1135
9DFC|1|2A|G|1136
9DFC|1|2A|G|1137
9DFC|1|2A|G|1138
9DFC|1|2A|G|1139
9DFC|1|2A|C|1140

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2Q

50S ribosomal protein L16