IL_9DFC_228

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFC_228 not in the Motif Atlas

Homologous match to IL_9DFE_059

Geometric discrepancy: 0.1002

The information below is about IL_9DFE_059

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9DFC|1|2A|A|1469
9DFC|1|2A|G|1470
9DFC|1|2A|A|1471
9DFC|1|2A|A|1472
9DFC|1|2A|G|1473
*
9DFC|1|2A|U|1518
9DFC|1|2A|G|1519
9DFC|1|2A|G|1520
9DFC|1|2A|U|1523

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains