IL_9DFC_232
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GAGAAC*GAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFC_232 not in the Motif Atlas
- Homologous match to IL_5J7L_304
- Geometric discrepancy: 0.0755
- The information below is about IL_5J7L_304
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12566.4
- Basepair signature
- cWW-L-tHS-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9DFC|1|2A|G|1651
9DFC|1|2A|A|1652
9DFC|1|2A|G|1653
9DFC|1|2A|A|1654
9DFC|1|2A|A|1655
9DFC|1|2A|C|1656
*
9DFC|1|2A|G|2004
9DFC|1|2A|A|2005
9DFC|1|2A|C|2006
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2E
- 50S ribosomal protein L3
- Chain 2R
- 50S ribosomal protein L17
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