IL_9DFC_235

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFC_235 not in the Motif Atlas

Geometric match to IL_8VTW_350

Geometric discrepancy: 0.0481

The information below is about IL_8VTW_350

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.2

Basepair signature

cWW-tHW-L-cWW-cWW-tSH-cWW-R-L-L

Number of instances in this motif group

6

Unit IDs

9DFC|1|2A|G|1666
9DFC|1|2A|G|1667
9DFC|1|2A|A|1668
9DFC|1|2A|A|1669
9DFC|1|2A|C|1670
9DFC|1|2A|U|1671
9DFC|1|2A|C|1672
9DFC|1|2A|U|1673
9DFC|1|2A|G|1674
*
9DFC|1|2A|C|1990
9DFC|1|2A|U|1991
9DFC|1|2A|G|1992
9DFC|1|2A|U|1993
9DFC|1|2A|C|1994

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14