IL_9DFC_255

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAGCC*GGCGCCGGUGAAAUAC

Length

22 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFC|1|2A|G|2124
9DFC|1|2A|G|2125
9DFC|1|2A|A|2126
9DFC|1|2A|G|2127
9DFC|1|2A|C|2128
9DFC|1|2A|C|2129
*
9DFC|1|2A|G|2159
9DFC|1|2A|G|2160
9DFC|1|2A|C|2161
9DFC|1|2A|G|2162
9DFC|1|2A|C|2163
9DFC|1|2A|C|2164
9DFC|1|2A|G|2165
9DFC|1|2A|G|2166
9DFC|1|2A|U|2167
9DFC|1|2A|G|2168
9DFC|1|2A|A|2169
9DFC|1|2A|A|2170
9DFC|1|2A|A|2171
9DFC|1|2A|U|2172
9DFC|1|2A|A|2173
9DFC|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA