3D structure

PDB id
9DFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CCGAG*CGGCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9DFC_264 not in the Motif Atlas
Homologous match to IL_9DFE_095
Geometric discrepancy: 0.0862
The information below is about IL_9DFE_095
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

9DFC|1|2A|C|2466
9DFC|1|2A|C|2467
9DFC|1|2A|G|2468
9DFC|1|2A|A|2469
9DFC|1|2A|G|2470
*
9DFC|1|2A|C|2480
9DFC|1|2A|G|2481
9DFC|1|2A|G|2482
9DFC|1|2A|C|2483
9DFC|1|2A|G|2484

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 29
50S ribosomal protein L36
Chain 2Q
50S ribosomal protein L16
Chain 2w
Transfer RNA; tRNA

Coloring options:


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