IL_9DFC_272

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

9DFC|1|2A|U|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFC_272 not in the Motif Atlas

Homologous match to IL_9DFE_103

Geometric discrepancy: 0.0738

The information below is about IL_9DFE_103

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9DFC|1|2A|C|2680
9DFC|1|2A|C|2681
9DFC|1|2A|U|2682
9DFC|1|2A|C|2683
9DFC|1|2A|U|2684
*
9DFC|1|2A|A|2725
9DFC|1|2A|U|2726
9DFC|1|2A|G|2727

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19