IL_9DFC_334

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CACCC*GGGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFC|1|2a|C|1260
9DFC|1|2a|A|1261
9DFC|1|2a|C|1262
9DFC|1|2a|C|1263
9DFC|1|2a|C|1264
*
9DFC|1|2a|G|1271
9DFC|1|2a|G|1272
9DFC|1|2a|G|1273
9DFC|1|2a|G|1274

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2s

30S ribosomal protein S19

Chain 2u

30S ribosomal protein Thx