IL_9DFC_339
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- (5MC)AC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFC_339 not in the Motif Atlas
- Homologous match to IL_4LFB_070
- Geometric discrepancy: 0.3171
- The information below is about IL_4LFB_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31531.3
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 13
Unit IDs
9DFC|1|2a|5MC|1407
9DFC|1|2a|A|1408
9DFC|1|2a|C|1409
*
9DFC|1|2a|G|1491
9DFC|1|2a|A|1492
9DFC|1|2a|A|1493
9DFC|1|2a|G|1494
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2l
- 30S ribosomal protein S12
- Chain 2v
- MET-PHE-mRNA
- Chain 2w
- Transfer RNA; tRNA
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