IL_9DFD_064
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAACUCUG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFD_064 not in the Motif Atlas
- Geometric match to IL_8VTW_350
- Geometric discrepancy: 0.037
- The information below is about IL_8VTW_350
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.2
- Basepair signature
- cWW-tHW-L-cWW-cWW-tSH-cWW-R-L-L
- Number of instances in this motif group
- 6
Unit IDs
9DFD|1|1A|G|1666
9DFD|1|1A|G|1667
9DFD|1|1A|A|1668
9DFD|1|1A|A|1669
9DFD|1|1A|C|1670
9DFD|1|1A|U|1671
9DFD|1|1A|C|1672
9DFD|1|1A|U|1673
9DFD|1|1A|G|1674
*
9DFD|1|1A|C|1990
9DFD|1|1A|U|1991
9DFD|1|1A|G|1992
9DFD|1|1A|U|1993
9DFD|1|1A|C|1994
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1O
- 50S ribosomal protein L14
- Chain 1T
- 50S ribosomal protein L19
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