IL_9DFD_085

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGUGAACCC*GGGGGAG

Length

17 nucleotides

Bulged bases

9DFD|1|1A|U|2132, 9DFD|1|1A|A|2134

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFD|1|1A|C|2129
9DFD|1|1A|U|2130
9DFD|1|1A|G|2131
9DFD|1|1A|U|2132
9DFD|1|1A|G|2133
9DFD|1|1A|A|2134
9DFD|1|1A|A|2135
9DFD|1|1A|C|2136
9DFD|1|1A|C|2137
9DFD|1|1A|C|2138
*
9DFD|1|1A|G|2153
9DFD|1|1A|G|2154
9DFD|1|1A|G|2155
9DFD|1|1A|G|2156
9DFD|1|1A|G|2157
9DFD|1|1A|A|2158
9DFD|1|1A|G|2159

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains