IL_9DFD_129
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAAGAAG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- 9DFD|1|1a|A|412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFD_129 not in the Motif Atlas
- Homologous match to IL_4LFB_017
- Geometric discrepancy: 0.0903
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
9DFD|1|1a|G|409
9DFD|1|1a|G|410
9DFD|1|1a|A|411
9DFD|1|1a|A|412
9DFD|1|1a|G|413
9DFD|1|1a|A|414
9DFD|1|1a|A|415
9DFD|1|1a|G|416
*
9DFD|1|1a|U|427
9DFD|1|1a|G|428
9DFD|1|1a|U|429
9DFD|1|1a|A|430
9DFD|1|1a|A|431
9DFD|1|1a|A|432
9DFD|1|1a|C|433
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
Coloring options: