IL_9DFD_143
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 9DFD|1|1a|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFD_143 not in the Motif Atlas
- Homologous match to IL_6CZR_143
- Geometric discrepancy: 0.1143
- The information below is about IL_6CZR_143
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37722.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9DFD|1|1a|G|683
9DFD|1|1a|A|684
9DFD|1|1a|G|685
9DFD|1|1a|U|686
9DFD|1|1a|A|687
9DFD|1|1a|G|688
*
9DFD|1|1a|C|699
9DFD|1|1a|G|700
9DFD|1|1a|C|701
9DFD|1|1a|A|702
9DFD|1|1a|G|703
9DFD|1|1a|A|704
9DFD|1|1a|U|705
9DFD|1|1a|A|706
9DFD|1|1a|C|707
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1k
- 30S ribosomal protein S11
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