IL_9DFD_162

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFD_162 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.1144

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9DFD|1|1a|C|1259
9DFD|1|1a|C|1260
9DFD|1|1a|A|1261
9DFD|1|1a|C|1262
*
9DFD|1|1a|G|1273
9DFD|1|1a|G|1274
9DFD|1|1a|A|1275
9DFD|1|1a|G|1276

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1u

30S ribosomal protein Thx