IL_9DFD_264

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9DFD|1|2A|G|2576, 9DFD|1|2A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFD_264 not in the Motif Atlas

Homologous match to IL_9DFE_097

Geometric discrepancy: 0.0746

The information below is about IL_9DFE_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

9DFD|1|2A|C|2510
9DFD|1|2A|U|2511
9DFD|1|2A|C|2512
*
9DFD|1|2A|G|2574
9DFD|1|2A|C|2575
9DFD|1|2A|G|2576
9DFD|1|2A|A|2577
9DFD|1|2A|G|2578

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3