IL_9DIB_004

3D structure

PDB id

9DIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rous sarcoma virus frameshifting pseudoknot RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.68 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

9DIB|1|B|C|16, 9DIB|1|B|U|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DIB_004 not in the Motif Atlas

Geometric match to IL_1FUF_003

Geometric discrepancy: 0.3356

The information below is about IL_1FUF_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

9DIB|1|B|A|15
9DIB|1|B|C|16
9DIB|1|B|U|17
*
9DIB|1|B|A|72
9DIB|1|B|U|73
9DIB|1|B|U|74

Current chains

Chain B

frameshifting pseudoknot RNA

Nearby chains