IL_9DN4_001

3D structure

PDB id

9DN4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a SARS-CoV-2 20-mer RNA in complex with FAB BL3-6S97N

Experimental method

X-RAY DIFFRACTION

Resolution

1.9 Å

Loop

Sequence

CGU*AG

Length

5 nucleotides

Bulged bases

9DN4|1|E|G|4

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DN4_001 not in the Motif Atlas

Geometric match to IL_4WF9_023

Geometric discrepancy: 0.306

The information below is about IL_4WF9_023

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

9DN4|1|E|C|3
9DN4|1|E|G|4
9DN4|1|E|U|5
*
9DN4|1|E|A|17
9DN4|1|E|G|18

Current chains

Chain E

RNA (5'-R(P*CP*UP*CP*GP*UP*CP*UP*GP*AP*AP*AP*CP*AP*CP*GP*GP*AP*GP*AP*G)-3')

Nearby chains

Chain A

FAB BL3-6S97N HEAVY CHAIN

Chain B

FAB BL3-6S97N LIGHT CHAIN