IL_9DP7_020
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GAAUGUAGCU*AGUAUUAUAGC
- Length
- 21 nucleotides
- Bulged bases
- 9DP7|1|A1|U|534, 9DP7|1|A1|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A1|G|531
9DP7|1|A1|A|532
9DP7|1|A1|A|533
9DP7|1|A1|U|534
9DP7|1|A1|G|535
9DP7|1|A1|U|536
9DP7|1|A1|A|537
9DP7|1|A1|G|538
9DP7|1|A1|C|539
9DP7|1|A1|U|540
*
9DP7|1|A1|A|551
9DP7|1|A1|G|552
9DP7|1|A1|U|553
9DP7|1|A1|A|554
9DP7|1|A1|U|555
9DP7|1|A1|U|556
9DP7|1|A1|A|557
9DP7|1|A1|U|558
9DP7|1|A1|A|559
9DP7|1|A1|G|560
9DP7|1|A1|C|561
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AM
- 60S ribosomal protein L14-A
- Chain AS
- 60S ribosomal protein L20
Coloring options: