IL_9DP7_040

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GCGAAU*AAAC

Length

10 nucleotides

Bulged bases

9DP7|1|A1|G|1001

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|G|999
9DP7|1|A1|C|1000
9DP7|1|A1|G|1001
9DP7|1|A1|A|1002
9DP7|1|A1|A|1003
9DP7|1|A1|U|1004
*
9DP7|1|A1|A|1046
9DP7|1|A1|A|1047
9DP7|1|A1|A|1048
9DP7|1|A1|C|1049

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A3

5S ribosomal RNA; 5S rRNA

Chain AD

Large ribosomal subunit protein uL18

Chain AI

Large ribosomal subunit protein uL16

Chain AT

60S ribosomal protein L21-A