IL_9DP7_040
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 9DP7|1|A1|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DP7_040 not in the Motif Atlas
- Homologous match to IL_9H3G_046
- Geometric discrepancy: 0.069
- The information below is about IL_9H3G_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.4
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9DP7|1|A1|G|999
9DP7|1|A1|C|1000
9DP7|1|A1|G|1001
9DP7|1|A1|A|1002
9DP7|1|A1|A|1003
9DP7|1|A1|U|1004
*
9DP7|1|A1|A|1046
9DP7|1|A1|A|1047
9DP7|1|A1|A|1048
9DP7|1|A1|C|1049
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- Large ribosomal subunit protein uL18
- Chain AI
- Large ribosomal subunit protein uL16
- Chain AT
- 60S ribosomal protein L21-A
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