IL_9DP7_059
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 9DP7|1|A1|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DP7_059 not in the Motif Atlas
- Homologous match to IL_9PN5_058
- Geometric discrepancy: 0.0417
- The information below is about IL_9PN5_058
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.4
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 31
Unit IDs
9DP7|1|A1|U|1388
9DP7|1|A1|G|1389
9DP7|1|A1|A|1390
9DP7|1|A1|C|1391
9DP7|1|A1|G|1392
9DP7|1|A1|A|1393
9DP7|1|A1|A|1394
9DP7|1|A1|G|1395
*
9DP7|1|A1|U|1415
9DP7|1|A1|C|1416
9DP7|1|A1|G|1417
9DP7|1|A1|A|1418
9DP7|1|A1|A|1419
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- Large ribosomal subunit protein uL4A
- Chain AE
- 60S ribosomal protein L6-A
- Chain AP
- 60S ribosomal protein L17-A
- Chain AY
- 60S ribosomal protein L26-A
- Chain Ae
- Large ribosomal subunit protein eL32
Coloring options: